biolm.seqframe

Sequence-centric dataframe abstraction (optional biolm-sdk[seqframe] extra).

See Working with SeqFrame for a usage guide, SeqFrame Metadata Schema Reference for Parquet metadata fields, and biolm.seqframe package for the module reference.

python
from biolm import SeqFrame

sf = (
    SeqFrame.from_fasta("proteins.fasta")
    .query.filter("length < 300")
    .query.limit(10)
)
ds = sf.to_dataset("my-proteins")
sf2 = ds.open_seqframe()

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