AbLang Heavy Chain API |
ablang-heavy |
antibody generator embeddings predict |
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AbLang empowers researchers with capabilities like embeddings, sequence restoration, and likelihood computation, directly catering to the unique structural and functional attributes of heavy/light-chain antibodies. AbLang's deep learning framework, trained on an extensive collection of heavy-chain antibody sequences, offers unparalleled insights into their design and optimization for therapeutic applications. |
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AbLang Light Chain API |
ablang-light |
antibody generator embeddings predict generate |
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AbLang is an advanced AI language model tailored for antibody design, enabling embeddings, sequence restoration, and computing likelihoods for heavy/light-chain antibodies. Trained on a comprehensive database of human antibody sequences, AbLang can provide insights into antibody sequence functionality, and aid in the development of therapeutic antibodies. |
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BioLMTox API |
biolmtox |
protein similarity toxin tokenize |
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We trained a NLP toxin detector to 98%+ recall, precision, and accuracy, creating a model that can recognize novel pathogenic sequences with as little as 60% identity to known toxins. Use this endpoint to screen pathogenic bacteria, potential neurotoxins and ion-channels, and other proteins. Obtain meaningful tokens related to pathogenicity. Perform semantic similarity searches. |
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DNABERT-2 API |
dnabert2 |
dna BERT |
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Analyze DNA sequences with precision using, leveraging a pretrained BERT model for accurate genomic feature prediction and interpretation directly from raw DNA strings. |
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DNABERT API |
dnabert |
dna BERT |
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This pre-trained language model surpasses conventional methods, providing superior accuracy and insights for DNA sequence classification, variant calling, and more. Ideal for researchers aiming to unlock genomic complexities efficiently. |
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ESM-1v #1 API/v1 |
esm1v_t33_650M_UR90S_1
esm1v_t33_650M_UR90S_2
esm1v_t33_650M_UR90S_3
esm1v_t33_650M_UR90S_4 esm1v_t33_650M_UR90S_5 |
enzyme protein maturation esm |
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First of five models in the ESM-1v series, each trained with a different seed. Predict favorable or unfavorable point-variants. NLP model trained on UniRef90. Zero-shot (unsupervised) predictor of functional effects. Ensemble with the remaining four models for best results. doi |
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ESM1v ALL API |
esm1v-all |
enzyme protein maturation esm |
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Conveniently retrieve predictions from all five ESM-1v models for a given position, allowing for rapid variant ranking and deep mutational scans. |
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ESM1v N1 API |
esm1v-n1 |
enzyme protein maturation esm |
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The 1st of the ESM-1v models, for unmasking AA positional likelihoods. |
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ESM1v N2 API |
esm1v-n2 |
enzyme protein maturation esm |
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2nd of the ESM-1v models. |
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ESM1v N3 API |
esm1v-n3 |
enzyme protein maturation esm |
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3rd ESM-1v model. |
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ESM1v N4 API |
esm1v-n4 |
enzyme protein maturation esm |
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4th ESM-1v model. |
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ESM1v N5 API |
esm1v-n5 |
enzyme protein maturation esm |
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The 5th of the ESM-1v models, for unmasking AA positional likelihoods. |
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ESM2 150M API |
esm2-150m |
enzyme protein embeddings esm logits |
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This 150M parameter ESM-2 model strikes a balance between accuracy and speed for embeddings, logits, attention and contact maps. |
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ESM2 35M API |
esm2-35m |
enzyme protein embeddings esm logits |
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This ESM-2 model contains 35M parameter, and is one of the smaller models in the suite. |
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ESM2 3B API |
esm2-3b |
enzyme protein embeddings esm logits |
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Use this 2nd-largest ESM-2 model for highly informative embeddings, contact maps, and more. |
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ESM2 650M API |
esm2-650m |
enzyme protein embeddings esm |
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For most applications requiring slightly more accuracy, use this 650M parameter ESM-2 model for embeddings, contact maps, and more. |
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ESM2 8M API |
esm2-8m |
enzyme protein embeddings esm logits |
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A small ESM-2 model, good for rapid development and applications requiring smaller datasets and quick response times. |
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ESMFold Multi-Chain API |
esmfold-multichain |
protein structure prediction esm |
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For multi-chain proteins like antibodies, predict the folded structure in seconds with v2 of ESMFold. Similar results, speed, and accuracy to single-chain folding endpoint, but now available for more complex sequences. PDBs via REST in less than a minute, using one of the largest protein LMs to date. doi |
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ESMFold Single-Chain API |
esmfold-singlechain |
protein structure prediction esm |
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Predict structure using Meta's SOTA language model. Similar in accuracy to AlphaFold2.0 and RoseTTAFold; magnitudes faster. Get predicted PDBs via REST in seconds, with one of the largest protein LMs to date. doi |
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ESM Inverse Fold API |
esm-if1 |
protein generator esm |
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ESM-IF1 Inverse Folding enables the generation of novel protein sequences tailored to fold into a specified 3D structure, as denoted by a PDB string. |
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ProGen2 BFD90 API |
progen2-bfd90 |
protein generator gpt |
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BFD-90 pretrained model from the suite of ProGen2 generative models. Tune outputs with your choice of pretrained model, temperature, length, and more. |
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ProGen2 Large API |
progen2-large |
protein generator gpt |
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ProGen2 Large contains 2.7B parameters and is the second-largest model in the suite of generative models. Tune outputs with your choice of pretrained model, temperature, length, and more. |
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ProGen2 Medium API |
progen2-medium |
protein generator gp2 |
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For faster protein generation, use this 764M parameter model from the ProGen2 suite of generative models. Tune outputs with your choice of pretrained model, temperature, length, and more. |
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ProGen2 OAS API |
progen2-oas |
antibody generator gpt |
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ProGen2 OAS was trained on the Observed Antibody Space, making it more suitable to some generative-antibody applications. Tune outputs with your choice of pretrained model, temperature, length, and more. |
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ProstT5 AA2Fold API |
prostt5-aa2fold |
folding proteins |
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ProstT5 Fold2AA API |
prostt5-fold2aa |
folding proteins |
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ProteInfer EC (Enzyme Commmision) API |
proteinfer-ec |
enzyme protein prediction EC |
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ProteInfer EC Prediction API leverages AI to accurately predict enzyme commission (EC) numbers from protein sequences, enhancing enzymatic research and biotechnological applications. |
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ProteInfer GO (Gene Ontology) API |
proteinfer-go |
protein GO predictor function |
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Harness the power of deep learning to predict Gene Ontology (GO) terms for proteins directly from sequence data. ProteInfer leverages a comprehensive dataset and advanced models to provide accurate functional annotations, offering insights into biological processes, cellular components, and molecular functions. |
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UniRef50 Embedding Similars API |
uniref50-similars |
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Accelerate your protein sequence searches with our blazing-fast Nearest Neighbors Search API. By leveraging protein language models to generate vector embeddings for over 65 million UniRef50 sequences, our service enables lightning-fast similarity searches that are 1,200 times faster than traditional Levenshtein-based methods like BLAST. |
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ZymCTRL API |
zymctrl |
enzymes generation |
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